PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G070800.1
Common NamePOPTR_0009s07510g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SRS
Protein Properties Length: 357aa    MW: 36965.7 Da    PI: 8.4982
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G070800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7022106.1e-651392983154
              DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstkls 92 
                         s t++CqdCGnqakkdC+h+RCRtCCksrgfdC thvkstWvpaa+rrerq +++a     a s+ +++  k++r   +++q+++s+t++s
  Potri.009G070800.1 139 SATTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCVTHVKSTWVPAARRRERQLMATAGGGGGAGSTgSTSGVKKPRL--ISSQTTTSHTSTS 227
                         57899*********************************************98888776666555536667777776..5888888888888 PP

              DUF702  93 saeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                         +++++ + +tss          lP +v ++a frcvrv++v+dge+e+aYq++v+igGhvfkG+LydqG+e+
  Potri.009G070800.1 228 NTTPR-SYDTSSshqgfefikrLPGQVTAPATFRCVRVTAVEDGEDEFAYQAVVKIGGHVFKGFLYDQGVET 298
                         88755.555555589999***************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.5E-61141297IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.9E-27143185IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.7E-28248296IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGMVGLRDVF VVAPAASFNH HHQHHEQINL STADPINASN ATALGVGVGV GVIPLLAAGP  60
CLAPQNMDDQ DLLNNGRNKI SGIHQFWQNQ GSQYIKKASN TTPSILDHHN NSSTANFLLQ  120
SGNSAGNGSG SLGGNSSSSA TTTCQDCGNQ AKKDCSHRRC RTCCKSRGFD CVTHVKSTWV  180
PAARRRERQL MATAGGGGGA GSTGSTSGVK KPRLISSQTT TSHTSTSNTT PRSYDTSSSH  240
QGFEFIKRLP GQVTAPATFR CVRVTAVEDG EDEFAYQAVV KIGGHVFKGF LYDQGVETRD  300
GFPNISELHL GGGSSSGGNG VGRNGASSSP ILDPSDVYGA STGGLLGGSG YGNPIN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.87200.0bud| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313255.20.0LATERAL ROOT PRIMORDIUM 1 family protein
SwissprotQ94CK91e-91LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLB9HNF90.0B9HNF9_POPTR; LATERAL ROOT PRIMORDIUM 1 family protein
STRINGPOPTR_0009s07510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Representative plantOGRP13131549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.23e-73Lateral root primordium (LRP) protein-related